rs6265062 SNP Detail

Summary

• ID
  rs6265062
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:60088893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAAT CCCCGTGTGG CCGAAACTCC
  R
  AGGAAGAAGA GCTGCGCCCA CAGCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8670867	WI_WGS_11_60735927	WI	MOUSE	f	SNP								G		A
ss37193310	NES08420736	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G	A		G		G	G	G	G	G	A	G
ss132249119	ENSMUSSNP3532140	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A								G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6265062					SNP	G	G	A	G	G	G	A	G	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37193310	NES08420736	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:60088893 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2979	CpG island 2979			1756 bp proximal
Rai1	retinoic acid induced 1			mRNA-UTR
				Noncoding-Transcript-Variant
Rr448348	regulatory region 448348			1092 bp distal
Rr448349	regulatory region 448349			32 bp proximal
Rr448350	regulatory region 448350			1756 bp proximal
Rr448351	regulatory region 448351			1993 bp proximal
Srebf1	sterol regulatory element binding transcription factor 1			1022 bp downstream
Tssr108277	transcription start site region 108277			1352 bp downstream