GTAAT CCCCGTGTGG CCGAAACTCC R AGGAAGAAGA GCTGCGCCCA CAGCC R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
CZECHII/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss8670867 | WI_WGS_11_60735927 | WI | MOUSE | f | SNP | G | A | |||||||||||||||
ss37193310 | NES08420736 | PERLEGEN | MM_PANEL2 | f | SNP | G | A | G | G | G | A | G | G | G | G | G | G | A | G | |||
ss132249119 | ENSMUSSNP3532140 | ENSEMBL | ENSEMBL_Sanger | f | SNP | G | A | G | ||||||||||||||
SNP Consensus Information | ||||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
CZECHII/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
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rs6265062 | SNP | G | G | A | G | G | G | A | G | G | A | G | G | G | G | G | A | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37193310 | NES08420736 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr11:60088893 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi2979 | CpG island 2979 | 1756 bp proximal | ||||||
Rai1 | retinoic acid induced 1 | mRNA-UTR | ||||||
Noncoding-Transcript-Variant | ||||||||
Rr448348 | regulatory region 448348 | 1092 bp distal | ||||||
Rr448349 | regulatory region 448349 | 32 bp proximal | ||||||
Rr448350 | regulatory region 448350 | 1756 bp proximal | ||||||
Rr448351 | regulatory region 448351 | 1993 bp proximal | ||||||
Srebf1 | sterol regulatory element binding transcription factor 1 | 1022 bp downstream | ||||||
Tssr108277 | transcription start site region 108277 | 1352 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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