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rs6265062 SNP Detail
Summary
  • ID
    rs6265062
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr11:60088893 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          GTAAT CCCCGTGTGG CCGAAACTCC
    R
    AGGAAGAAGA GCTGCGCCCA CAGCC                                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
CZECHII/EiJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss8670867 WI_WGS_11_60735927 WI MOUSE f SNP G A
ss37193310 NES08420736 PERLEGEN MM_PANEL2 f SNP G A G G G A G G G G G G A G
ss132249119 ENSMUSSNP3532140 ENSEMBL ENSEMBL_Sanger f SNP G A G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
CZECHII/EiJ
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs6265062 SNP G G A G G G A G G A G G G G G A G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37193310 NES08420736 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:60088893 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi2979 CpG island 2979 1756 bp proximal
Rai1 retinoic acid induced 1 mRNA-UTR
Noncoding-Transcript-Variant
Rr448348 regulatory region 448348 1092 bp distal
Rr448349 regulatory region 448349 32 bp proximal
Rr448350 regulatory region 448350 1756 bp proximal
Rr448351 regulatory region 448351 1993 bp proximal
Srebf1 sterol regulatory element binding transcription factor 1 1022 bp downstream
Tssr108277 transcription start site region 108277 1352 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory