rs6264127 SNP Detail

Summary

• ID
  rs6264127
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:116261675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACATAATA TATTCTTTTT
  GAACACAAAA AAATAAAATA AATTAAAATT AGTTCAGGGG AATTGAGAGG ACCAGGGTGC
  TTTTTGGGGA GTGGGGGATA TCTTTACAAA TGTCAAATAA ACCTAACGAA AGCAAGAAAC
  ACTGTTGTAT TTCACAAAAA CAGACCCTCA TAAGTTGGTT GATCAGCTAG AATTTATACT
  R
  GAACCGTCAT TGTGTCCATG ATGAGCTAGC TAGTTTGTTA TTTACAAAAA AAAAAAAAAA
  AAAAAAAACC CAGAGCAAGA TGATCTGATT TATGGTGCAT GATAAACATA TCCAAATTTG
  AGAAGAAATG TGGTGAGTTA TTTTAATGCT AAAGGTATTC ATTAAAATTA CATTTAAGTT
  GTCTGTCAGT CTCTGCATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8669930	WI_WGS_4_114167020	WI	MOUSE	f	SNP							A		G
ss37694674	NES09227239	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		G		A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6264127					SNP	A	A	A	A	A	A	A	G	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37694674	NES09227239	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116261675 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mast2	microtubule associated serine/threonine kinase 2			Intron
				Noncoding-Transcript-Variant
Rr597905	regulatory region 597905			1489 bp distal
Rr597906	regulatory region 597906			295 bp distal
Rr597907	regulatory region 597907			419 bp distal
Rr597908	regulatory region 597908			942 bp proximal
Tssr42878	transcription start site region 42878			41 bp downstream
Tssr42879	transcription start site region 42879			1630 bp downstream
Tssr42880	transcription start site region 42880			1656 bp downstream