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rs6264075 SNP Detail
Summary
  • ID
    rs6264075
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr11:60088719 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TTCCC TACCTAACCC AGTTTCTCCC
    W
    GCCCTGCCAG AGAGTAGGGA GGGGT                                      
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
C57BL/6J
CZECHII/EiJ
DBA/2J
ss8669878 WI_WGS_11_60735753 WI MOUSE f SNP T A
ss38780683 mCV23675945 ABI CRAMUS_MOUSE r SNP A T A A
ss132249115 ENSMUSSNP1997181 ENSEMBL ENSEMBL_Sanger f SNP T A T
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
C57BL/6J
CZECHII/EiJ
DBA/2J
rs6264075 SNP T A T A T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:60088719 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi2979 CpG island 2979 1930 bp proximal
Rai1 retinoic acid induced 1 Intron
Noncoding-Transcript-Variant
Rr448348 regulatory region 448348 918 bp distal
Rr448349 regulatory region 448349 206 bp proximal
Rr448350 regulatory region 448350 1930 bp proximal
Srebf1 sterol regulatory element binding transcription factor 1 1196 bp downstream
Tssr108277 transcription start site region 108277 1526 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory