rs6264075 SNP Detail

Summary

• ID
  rs6264075
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:60088719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCC TACCTAACCC AGTTTCTCCC
  W
  GCCCTGCCAG AGAGTAGGGA GGGGT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8669878	WI_WGS_11_60735753	WI	MOUSE	f	SNP			T	A
ss38780683	mCV23675945	ABI	CRAMUS_MOUSE	r	SNP	A	T	A		A
ss132249115	ENSMUSSNP1997181	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6264075					SNP	T	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:60088719 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2979	CpG island 2979			1930 bp proximal
Rai1	retinoic acid induced 1			Intron
				Noncoding-Transcript-Variant
Rr448348	regulatory region 448348			918 bp distal
Rr448349	regulatory region 448349			206 bp proximal
Rr448350	regulatory region 448350			1930 bp proximal
Srebf1	sterol regulatory element binding transcription factor 1			1196 bp downstream
Tssr108277	transcription start site region 108277			1526 bp downstream