TTCCC TACCTAACCC AGTTTCTCCC W GCCCTGCCAG AGAGTAGGGA GGGGT W = A/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129X1/SvJ |
A/J |
C57BL/6J |
CZECHII/EiJ |
DBA/2J |
---|---|---|---|---|---|---|---|---|---|---|
ss8669878 | WI_WGS_11_60735753 | WI | MOUSE | f | SNP | T | A | |||
ss38780683 | mCV23675945 | ABI | CRAMUS_MOUSE | r | SNP | A | T | A | A | |
ss132249115 | ENSMUSSNP1997181 | ENSEMBL | ENSEMBL_Sanger | f | SNP | T | A | T | ||
SNP Consensus Information | ||||||||||
SNP | Consensus Type | 129X1/SvJ |
A/J |
C57BL/6J |
CZECHII/EiJ |
DBA/2J |
||||
rs6264075 | SNP | T | A | T | A | T |
Location: Chr11:60088719 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi2979 | CpG island 2979 | 1930 bp proximal | ||||||
Rai1 | retinoic acid induced 1 | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Rr448348 | regulatory region 448348 | 918 bp distal | ||||||
Rr448349 | regulatory region 448349 | 206 bp proximal | ||||||
Rr448350 | regulatory region 448350 | 1930 bp proximal | ||||||
Srebf1 | sterol regulatory element binding transcription factor 1 | 1196 bp downstream | ||||||
Tssr108277 | transcription start site region 108277 | 1526 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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