rs6263753 SNP Detail

Summary

• ID
  rs6263753
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:3685458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         AAATTCATGT
  TGGAAAAGCT TCCACAGGTC TTTTNTAACT GTCATGTGAT TAAATCATGT ACTGAGGtgt
  tttgttttgt tttgctttgt tttgttttct ttGCGGGTAC AGTTGAGTGT ttactgtgta
  actgaagcca gcctcaaatt tgtgtttttc ctgcctcagt ctctggatcc aaagattatg
  gatgtatatc acAATATATG GTAACAATGA AGCTTTTGCA TCCATCACAT TTTTAATTTA
  Y
  ATTGTCTTTA ATTTNCTGta tattttgatt tattttttta tttttaaCAT AAGAATTTAT
  TGCCACTGAT TTTTTCCATT ATTANCCTTT TACTTCAGAT CATATTTTAG ACTGATTAAG
  ATATCTTTAC TTATCTTTGT CTGTTTCTTT CCATTTAAAA CAATTTTCAA GGAAGCTTAG
  TCTAAATCAT AAAACTATTA TAATATCTAA TGGACTGAAA TATCATCCAT CAGGCATGGT
  TTACTCAATC                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8669556	WI_WGS_3_3629473	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6263753					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:3685458 () rs orientation: forward

Symbol	Name	Function Class
Hnf4g	hepatocyte nuclear factor 4, gamma	Intron
Rr573144	regulatory region 573144	1318 bp distal