rs6262735 SNP Detail

Summary

• ID
  rs6262735
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150653086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCTCTCC TACAGTGCTG
  TGCCACCAGC CTCGGCTGCT CTCTTCGTAC TCCACAACTT GGGCCTCCCC AGGGAACGCT
  CCACCTTCAA CCCCTGGTCG ACCATTGGAT CTTAACTCCT CAAAGCTCAG TGCAGCCTGA
  TCCTCACTGC CCTCTAAAAG TCATCTACAA GCAGTCAGTT TTTCTTTCTG CATACCTTGT
  Y
  CTCCTTGGAG TTTCCAGAAT GTTCCTATGT CCTTCCTGGG CAACTGGAAG CCCAGCTGGA
  GCTCACCTGG CAGGCTTATG CTCTTCCTTG TCAAGTCCCC TAAGTCAAGC AGAGCTTGCT
  TCCTCTTCCG AGCTCCACCC ACCACCCTTT GTTCCTCTAC TGCTTTCTTT ATAGGCCCAA
  GGTCCATCTG TACCTATTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8668536	WI_WGS_4_145965376	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6262735					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150653086 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15352	CpG island 15352	425 bp proximal
Gm13091	predicted gene 13091	within coordinates
Rere	arginine glutamic acid dipeptide (RE) repeats	Intron
Rr605335	regulatory region 605335	1994 bp distal
Rr605336	regulatory region 605336	96 bp distal
Rr605337	regulatory region 605337	within coordinates
Rr605338	regulatory region 605338	1606 bp proximal
Tssr40417	transcription start site region 40417	187 bp upstream
Tssr40418	transcription start site region 40418	588 bp upstream
Tssr40419	transcription start site region 40419	620 bp upstream
Tssr40420	transcription start site region 40420	855 bp upstream
Tssr40421	transcription start site region 40421	909 bp upstream
Tssr40422	transcription start site region 40422	1571 bp upstream
Tssr44743	transcription start site region 44743	1753 bp upstream
Tssr44744	transcription start site region 44744	71 bp downstream
Tssr44745	transcription start site region 44745	1236 bp downstream
Tssr44746	transcription start site region 44746	1437 bp downstream
Tssr44747	transcription start site region 44747	1447 bp downstream
Tssr44748	transcription start site region 44748	1485 bp downstream
Tssr44749	transcription start site region 44749	1636 bp downstream