rs6262203 SNP Detail

Summary

• ID
  rs6262203
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150652985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTGCAAAA AGCTAGTCAC
  AGTTTAAGCA TATCCTGTCA AGGTTTTTCA AAGTCCCTCC CAGTGCTAGA TGTACAGTAA
  CTCACCAGAG TGAATTCAGG GCCTCCTCTC CTACAGTGCT GTGCCACCAG CCTCGGCTGC
  TCTCTTCGTA CTCCACAACT TGGGCCTCCC CAGGGAACGC TCCACCTTCA ACCCCTGGTC
  K
  ACCATTGGAT CTTAACTCCT CAAAGCTCAG TGCAGCCTGA TCCTCACTGC CCTCTAAAAG
  TCATCTACAA GCAGTCAGTT TTTCTTTCTG CATACCTTGT CCTCCTTGGA GTTTCCAGAA
  TGTTCCTATG TCCTTCCTGG GCAACTGGAA GCCCAGCTGG AGCTCACCTG GCAGGCTTAT
  GCTCTTCCTT GTCAAGTCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8668004	WI_WGS_4_145965275	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6262203					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150652985 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15352	CpG island 15352	526 bp proximal
Gm13091	predicted gene 13091	within coordinates
Rere	arginine glutamic acid dipeptide (RE) repeats	Intron
Rr605335	regulatory region 605335	1893 bp distal
Rr605336	regulatory region 605336	within coordinates
Rr605337	regulatory region 605337	6 bp proximal
Rr605338	regulatory region 605338	1707 bp proximal
Tssr40416	transcription start site region 40416	1944 bp downstream
Tssr40417	transcription start site region 40417	288 bp upstream
Tssr40418	transcription start site region 40418	689 bp upstream
Tssr40419	transcription start site region 40419	721 bp upstream
Tssr40420	transcription start site region 40420	956 bp upstream
Tssr40421	transcription start site region 40421	1010 bp upstream
Tssr40422	transcription start site region 40422	1672 bp upstream
Tssr44743	transcription start site region 44743	1652 bp upstream
Tssr44744	transcription start site region 44744	172 bp downstream
Tssr44745	transcription start site region 44745	1337 bp downstream
Tssr44746	transcription start site region 44746	1538 bp downstream
Tssr44747	transcription start site region 44747	1548 bp downstream
Tssr44748	transcription start site region 44748	1586 bp downstream
Tssr44749	transcription start site region 44749	1737 bp downstream