rs6262169 SNP Detail

Summary

• ID
  rs6262169
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150652963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGACTGTA TGCACTTACT
  TTACCTGCAA AAAGCTAGTC ACAGTTTAAG CATATCCTGT CAAGGTTTTT CAAAGTCCCT
  CCCAGTGCTA GATGTACAGT AACTCACCAG AGTGAATTCA GGGCCTCCTC TCCTACAGTG
  CTGTGCCACC AGCCTCGGCT GCTCTCTTCG TACTCCACAA CTTGGGCCTC CCCAGGGAAC
  R
  CTCCACCTTC AACCCCTGGT CGACCATTGG ATCTTAACTC CTCAAAGCTC AGTGCAGCCT
  GATCCTCACT GCCCTCTAAA AGTCATCTAC AAGCAGTCAG TTTTTCTTTC TGCATACCTT
  GTCCTCCTTG GAGTTTCCAG AATGTTCCTA TGTCCTTCCT GGGCAACTGG AAGCCCAGCT
  GGAGCTCACC TGGCAGGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8667970	WI_WGS_4_145965253	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6262169					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150652963 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15352	CpG island 15352	548 bp proximal
Gm13091	predicted gene 13091	within coordinates
Rere	arginine glutamic acid dipeptide (RE) repeats	Intron
Rr605335	regulatory region 605335	1871 bp distal
Rr605336	regulatory region 605336	within coordinates
Rr605337	regulatory region 605337	28 bp proximal
Rr605338	regulatory region 605338	1729 bp proximal
Tssr40416	transcription start site region 40416	1922 bp downstream
Tssr40417	transcription start site region 40417	310 bp upstream
Tssr40418	transcription start site region 40418	711 bp upstream
Tssr40419	transcription start site region 40419	743 bp upstream
Tssr40420	transcription start site region 40420	978 bp upstream
Tssr40421	transcription start site region 40421	1032 bp upstream
Tssr40422	transcription start site region 40422	1694 bp upstream
Tssr44743	transcription start site region 44743	1630 bp upstream
Tssr44744	transcription start site region 44744	194 bp downstream
Tssr44745	transcription start site region 44745	1359 bp downstream
Tssr44746	transcription start site region 44746	1560 bp downstream
Tssr44747	transcription start site region 44747	1570 bp downstream
Tssr44748	transcription start site region 44748	1608 bp downstream
Tssr44749	transcription start site region 44749	1759 bp downstream