rs6261566 SNP Detail

Summary

• ID
  rs6261566
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150652828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGCTCCC TCTAACCCTA
  CAAACACTGC TCCTCCCATT GGTAACCTGC CTTGGTGAGA AGATGTTCTG GCCTCCCTTG
  GTGCACAGTT GCGATGCCCC TTGCTGCTTT CAGGTAGTAC CCTGGAGTGC TCTGTGATGA
  CTGTATGCAC TTACTTTACC TGCAAAAAGC TAGTCACAGT TTAAGCATAT CCTGTCAAGG
  Y
  TTTTCAAAGT CCCTCCCAGT GCTAGATGTA CAGTAACTCA CCAGAGTGAA TTCAGGGCCT
  CCTCTCCTAC AGTGCTGTGC CACCAGCCTC GGCTGCTCTC TTCGTACTCC ACAACTTGGG
  CCTCCCCAGG GAACGCTCCA CCTTCAACCC CTGGTCGACC ATTGGATCTT AACTCCTCAA
  AGCTCAGTGC AGCCTGATCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	MSM/Ms
ss8667364	WI_WGS_4_145965118	WI	MOUSE	f	SNP			T	C
ss148055010	ENSMUSSNP6592476	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	MSM/Ms
rs6261566					SNP	T	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150652828 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15352	CpG island 15352	683 bp proximal
Gm13091	predicted gene 13091	within coordinates
Rere	arginine glutamic acid dipeptide (RE) repeats	Intron
Rr398883	regulatory region 398883	1889 bp downstream
Rr605335	regulatory region 605335	1736 bp distal
Rr605336	regulatory region 605336	within coordinates
Rr605337	regulatory region 605337	163 bp proximal
Rr605338	regulatory region 605338	1864 bp proximal
Tssr40415	transcription start site region 40415	1877 bp downstream
Tssr40416	transcription start site region 40416	1787 bp downstream
Tssr40417	transcription start site region 40417	445 bp upstream
Tssr40418	transcription start site region 40418	846 bp upstream
Tssr40419	transcription start site region 40419	878 bp upstream
Tssr40420	transcription start site region 40420	1113 bp upstream
Tssr40421	transcription start site region 40421	1167 bp upstream
Tssr40422	transcription start site region 40422	1829 bp upstream
Tssr44743	transcription start site region 44743	1495 bp upstream
Tssr44744	transcription start site region 44744	329 bp downstream
Tssr44745	transcription start site region 44745	1494 bp downstream
Tssr44746	transcription start site region 44746	1695 bp downstream
Tssr44747	transcription start site region 44747	1705 bp downstream
Tssr44748	transcription start site region 44748	1743 bp downstream
Tssr44749	transcription start site region 44749	1894 bp downstream