rs6260770 SNP Detail

Summary

• ID
  rs6260770
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:16364708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTTGAAA ATATTAAAAT
  CATGTTCTAC AAACATCATG GAGATTTTAT TAATTTTTCT CACTGTGCTT GAAATTAGCA
  TTTTCTTAAT GGTTAACTTC AAGGACTTTT TGCTATTTTG AAAATTTTAA AATATACTTA
  CTGATAAAAT AATTTTCCTC CTAGAAGCAC TAATAACCTT TTTTTAAAGT AAACTGATTG
  Y
  TAGACAATGT ATACAGATAT ACAATGCGTT TTAAATACTA TCTCACTATG TTAGGTGGTA
  TCATATATGG GCTTTTGAAT ATATTTCTTA ATGATTTATT TTTAATATTT TATGTTCTTT
  TACTATGCTT AATTCCCAAA GAATATTTTG TATGTTTTGA GATTATTTAT TATACACACT
  AGATATAGGA TCCTCAGTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss8666565	WI_WGS_3_16049996	WI	MOUSE	f	SNP							T		C
ss49565263	NES12888133	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C		T	T	T		C	T	T		T
ss320671137	CHEV_3_16210544	CHEVERUD	SCREENING_POP	f	SNP													T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs6260770					SNP	T	T	T	T	T	T	T	C	C	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49565263	NES12888133	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16364708 () rs orientation: forward

Symbol	Name	Function Class
Rr573795	regulatory region 573795	413 bp proximal
Rr573796	regulatory region 573796	489 bp proximal