rs6259414 SNP Detail

Summary

• ID
  rs6259414
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:73109733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGAAGAG AAAGCCAGAG
  TCTCACAGCT ATGACCAGCC TGGACCCACC GAGCACCTCA ACAGACCTCT GCAGGGTTTC
  CGTGCAATGG GAGGCGACCA CTGCTCAAGT GGGGCGCAGC GGGCATGGGG CAGCTCGACG
  GGGCCCCAGA GGGCGACCAG GAGCCCCCAG AGCCCTCGCC CCAGGCCCTC CCGACGGGTG
  Y
  GCACCCCCTC CCAGAACAGA CCCACCCCTT TTGTCCTTGC CTTTTCGAAA CCCAAATCTG
  AAATGAGATA ACAGTTGGGG GCGTTGGCCA ATTTTCTCTT CTCTGTGCAT CGCCCTGCCT
  CCCGCCGCCC CCTTCCCTCC TCTTCCTAGT CCACTACCCC TCCCCCATCC ACTAGCTTTA
  GAGGGCTTGT AGGGACTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8665203	WI_WGS_2_74114204	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6259414					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73109733 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11769	CpG island 11769	1361 bp distal
Cpgi11770	CpG island 11770	within coordinates
Cpgi11771	CpG island 11771	1214 bp proximal
Rr559121	regulatory region 559121	940 bp distal
Rr559122	regulatory region 559122	within coordinates
Rr559123	regulatory region 559123	722 bp distal
Rr559124	regulatory region 559124	850 bp proximal