rs6259359 SNP Detail

Summary

• ID
  rs6259359
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148024548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTA CAACCCACTA GAAGCCACCT
  Y
  AAGTGACCGT TCAATTGTCA ACTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8665148	WI_WGS_4_143299349	WI	MOUSE	f	SNP	T	C
ss321415872	CHEV_4_147314200	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6259359					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148024548 () rs orientation: forward

Symbol	Name	Function Class
2510039O18Rik	RIKEN cDNA 2510039O18 gene	mRNA-UTR
Rr398852	regulatory region 398852	615 bp upstream
Rr604528	regulatory region 604528	1002 bp distal
Rr604529	regulatory region 604529	314 bp proximal
Rr604530	regulatory region 604530	761 bp proximal
Tssr40235	transcription start site region 40235	768 bp upstream
Tssr40236	transcription start site region 40236	835 bp upstream