rs6259342 SNP Detail

Summary

• ID
  rs6259342
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148024530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCATA CAGTTTTCTG TCTGCCTACA
  R
  CCCACTAGAA GCCACCTTAA GTGAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8665131	WI_WGS_4_143299331	WI	MOUSE	f	SNP			A	G
ss147987519	ENSMUSSNP2941349	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A			G
ss321415871	CHEV_4_147314182	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6259342					SNP	G	A	A	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148024530 () rs orientation: forward

Symbol	Name	Function Class
2510039O18Rik	RIKEN cDNA 2510039O18 gene	mRNA-UTR
Cpgi15285	CpG island 15285	574 bp proximal
Rr398852	regulatory region 398852	633 bp upstream
Rr604528	regulatory region 604528	984 bp distal
Rr604529	regulatory region 604529	332 bp proximal
Rr604530	regulatory region 604530	779 bp proximal
Tssr40235	transcription start site region 40235	786 bp upstream
Tssr40236	transcription start site region 40236	853 bp upstream