rs6259238 SNP Detail

Summary

• ID
  rs6259238
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127682536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCAATACA ATAAATAAAG
  GGGAGAGAAC TAAATATGAA GTGTATTCAT TTTATAATAT ACCTTATACG CTCTGCCTAA
  GGTTAATGAA TGCAGTTTCC TGTGTACTTG AGTTGTGACT GTAAACTCTC TTGGAGGACT
  TGAGGTACTC AGTGGACAGA TACTCAGCCT GTTAGGCACG TTTCCTGCGT TCTTCCTGTG
  R
  TGCACTAGTG TATCCTACAG TCTGGACAGT AACAGCATCT ACTCACAGGG AGCCAGATCA
  GGTTTCTCAC CAAAAGACTT TGTATGAATT GGTGATGGAA GAAACTAGCC AAAGTCACAC
  AGTTTTCCTA CAATGTGACT TTCCTTCTCA AGACTCACTT TGTAGTAGTG TGAGAGTACT
  TTCTCATATT TAAAAAAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8665027	WI_WGS_3_128372689	WI	MOUSE	f	SNP			G	A
ss135874280	ENSMUSSNP3917830	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A			G
ss320957922	CHEV_3_127591805	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6259238					SNP	A	A	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127682536 () rs orientation: forward

Symbol	Name	Function Class
Fam241a	family with sequence similarity 241, member A	Intron
Rr584892	regulatory region 584892	520 bp proximal
Rr584893	regulatory region 584893	1243 bp proximal
Rr584894	regulatory region 584894	1909 bp proximal