rs6259121 SNP Detail

Summary

• ID
  rs6259121
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127682463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAGAAACA TCCAGAAATA
  TCACAATTGT TATGCCATAT TCATTACCAT GTAAAATGCA CTGTAATAAA ACTAATCAAT
  ACAATAAATA AAGGGGAGAG AACTAAATAT GAAGTGTATT CATTTTATAA TATACCTTAT
  ACGCTCTGCC TAAGGTTAAT GAATGCAGTT TCCTGTGTAC TTGAGTTGTG ACTGTAAACT
  S
  TCTTGGAGGA CTTGAGGTAC TCAGTGGACA GATACTCAGC CTGTTAGGCA CGTTTCCTGC
  GTTCTTCCTG TGGTGCACTA GTGTATCCTA CAGTCTGGAC AGTAACAGCA TCTACTCACA
  GGGAGCCAGA TCAGGTTTCT CACCAAAAGA CTTTGTATGA ATTGGTGATG GAAGAAACTA
  GCCAAAGTCA CACAGTTTTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8664909	WI_WGS_3_128372616	WI	MOUSE	f	SNP			C	G
ss135874277	ENSMUSSNP1494751	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320957921	CHEV_3_127591732	CHEVERUD	SCREENING_POP	f	SNP					C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6259121					SNP	G	G	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127682463 () rs orientation: forward

Symbol	Name	Function Class
Fam241a	family with sequence similarity 241, member A	Intron
Rr584892	regulatory region 584892	593 bp proximal
Rr584893	regulatory region 584893	1316 bp proximal
Rr584894	regulatory region 584894	1982 bp proximal