rs6258996 SNP Detail

Summary

• ID
  rs6258996
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:73109704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACCTCCTC AGCTTCCCAG
  AACCCCTAAC ACAGAAGAGA AAGCCAGAGT CTCACAGCTA TGACCAGCCT GGACCCACCG
  AGCACCTCAA CAGACCTCTG CAGGGTTTCC GTGCAATGGG AGGCGACCAC TGCTCAAGTG
  GGGCGCAGCG GGCATGGGGC AGCTCGACGG GGCCCCAGAG GGCGACCAGG AGCCCCCAGA
  R
  CCCTCGCCCC AGGCCCTCCC GACGGGTGCG CACCCCCTCC CAGAACAGAC CCACCCCTTT
  TGTCCTTGCC TTTTCGAAAC CCAAATCTGA AATGAGATAA CAGTTGGGGG CGTTGGCCAA
  TTTTCTCTTC TCTGTGCATC GCCCTGCCTC CCGCCGCCCC CTTCCCTCCT CTTCCTAGTC
  CACTACCCCT CCCCCATCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8664784	WI_WGS_2_74114175	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6258996					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73109704 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11769	CpG island 11769	1332 bp distal
Cpgi11770	CpG island 11770	within coordinates
Cpgi11771	CpG island 11771	1243 bp proximal
Rr559121	regulatory region 559121	911 bp distal
Rr559122	regulatory region 559122	within coordinates
Rr559123	regulatory region 559123	693 bp distal
Rr559124	regulatory region 559124	879 bp proximal