rs6258764 SNP Detail

Summary

• ID
  rs6258764
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148024414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGA AGTCCAGTCT GGACAACAAA
  R
  GAAAGATTCT GTCTCAAAGA TAAAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	MSM/Ms	SM/J
ss8664552	WI_WGS_4_143299215	WI	MOUSE	f	SNP			G	A
ss45702574	mCV23034665	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss147987514	ENSMUSSNP6859697	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G			A		G
ss321415870	CHEV_4_147314066	CHEVERUD	SCREENING_POP	f	SNP						A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	MSM/Ms	SM/J
rs6258764					SNP	A	G	G	A	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148024414 () rs orientation: forward

Symbol	Name	Function Class
2510039O18Rik	RIKEN cDNA 2510039O18 gene	mRNA-UTR
Cpgi15285	CpG island 15285	690 bp proximal
Rr377387	regulatory region 377387	1943 bp downstream
Rr398852	regulatory region 398852	749 bp upstream
Rr604528	regulatory region 604528	868 bp distal
Rr604529	regulatory region 604529	448 bp proximal
Rr604530	regulatory region 604530	895 bp proximal
Tssr40235	transcription start site region 40235	902 bp upstream
Tssr40236	transcription start site region 40236	969 bp upstream