rs6258380 SNP Detail

Summary

• ID
  rs6258380
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:73109532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGAGCGTT GTCGGTAGCG
  GCAGCGACGT GCACCCTGGG TAGAGATCCC GCGGTGGGCA CAGCTTGCCT CGCACACTTC
  ACCCAGCGTC CTAGGGTCCA GGGCTGCGGG ACCATCGGGT CTGCCTGGAC TACCCAGGAC
  GGGCGTGAAC GCAGTTTACC ACCAGGTCAC CAAGACCTCC TCAGCTTCCC AGAACCCCTA
  R
  CACAGAAGAG AAAGCCAGAG TCTCACAGCT ATGACCAGCC TGGACCCACC GAGCACCTCA
  ACAGACCTCT GCAGGGTTTC CGTGCAATGG GAGGCGACCA CTGCTCAAGT GGGGCGCAGC
  GGGCATGGGG CAGCTCGACG GGGCCCCAGA GGGCGACCAG GAGCCCCCAG AGCCCTCGCC
  CCAGGCCCTC CCGACGGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8664167	WI_WGS_2_74114003	WI	MOUSE	f	SNP							A		G
ss38117478	NES09272540	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		G		A	A	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6258380					SNP	A	A	A	A	A	A	A	G	G	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38117478	NES09272540	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73109532 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11769	CpG island 11769	1160 bp distal
Cpgi11770	CpG island 11770	within coordinates
Cpgi11771	CpG island 11771	1415 bp proximal
Rr559121	regulatory region 559121	739 bp distal
Rr559122	regulatory region 559122	within coordinates
Rr559123	regulatory region 559123	521 bp distal
Rr559124	regulatory region 559124	1051 bp proximal