rs6257837 SNP Detail

Summary

• ID
  rs6257837
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108323285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTGCGCCC GCGGGCCGCG
  AGGATCTCTG GCTCTGCCGG GTCCCCCGGT CCCGAGCCCC AGAATGTCCC CTCCGCCCGC
  GTAAGGTCGC CCACCTGCGT CTGCGGAGCC TCACGCTCCG GCCCGGGCCC GGCTGCCAAC
  GATGGCCCTG CGCCACCCGC TCGCGCCCTG CGTCCCCGCC GCGGCAGCTA CCGGTCGCCG
  S
  GGTCCCGGGC CCAGACCCGC GTTCCCTCGC CTCCCGGGCG GGCGGGCGAG CTCTGCAGAG
  CAGCGGCGGT GGTGGCGGCG GCTCATTACC ATAGACCTGC TCGCGCCGCC GCGGTCTTAA
  AGCGGCGACG CCCAACGCGC CGAGGAGGTG GGCCCCACCC AGCGCCCTCT TCTGCATGGC
  GGCTCTAAGT AAGATTCCCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8663620	WI_WGS_3_108908906	WI	MOUSE	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6257837					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108323285 () rs orientation: forward

Symbol	Name	Function Class
Celsr2	cadherin, EGF LAG seven-pass G-type receptor 2	mRNA-UTR
Cpgi13701	CpG island 13701	within coordinates
Gm52630	predicted gene, 52630	95 bp upstream
Rr583231	regulatory region 583231	within coordinates
Rr583232	regulatory region 583232	88 bp proximal
Rr583233	regulatory region 583233	130 bp proximal
Rr583234	regulatory region 583234	159 bp proximal
Tssr31250	transcription start site region 31250	10 bp upstream
Tssr35143	transcription start site region 35143	42 bp downstream
Tssr35144	transcription start site region 35144	83 bp downstream