rs6257820 SNP Detail

Summary

• ID
  rs6257820
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:9268662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTTATAT GCATAAATAC
  CTACACAAAT TGCTGAGTAG AATTAGAAGA CTGTATATCA TATATATTTT CAGACTCTTG
  AAGTACATTT TGACGTGGAT CTGTAGGAAG ATTATACTTT CTCACTTAAT GTCTTAGGAT
  ATGGGATACT GTGTGGATTT AAATGTTTTT GTCCTAAACC ATACATCATT GCTCCTTTAT
  Y
  GTTCTTTCTT TCTCTCTTTC TCTGTCTTTC TTCTTTTAGC ATGTCTTTGG TACTTTATTA
  AGTTATGCAT TGCGTTTTAG TGGTAAGCTG ACTTTTAAAA TGTTTGTTGG ATCTTCAGCA
  TTTTCTTTTT ATTATGAAAT AGCTATGCAT GAAACACATT TGTTGTGATT TTTTTCAAGT
  GATAATTTAC ATGCATGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8663603	WI_WGS_4_8747034	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6257820					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9268662 () rs orientation: forward

Symbol	Name	Function Class
Clvs1	clavesin 1	Intron
Cpgi14015	CpG island 14015	647 bp proximal
Rr588683	regulatory region 588683	393 bp proximal
Rr588684	regulatory region 588684	666 bp proximal
Tssr36453	transcription start site region 36453	623 bp upstream
Tssr36454	transcription start site region 36454	676 bp upstream