rs6256892 SNP Detail

Summary

• ID
  rs6256892
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108323131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACTGGGC CTGCACCCAG
  ATGGCTCGGC GGGGCCGCGC TCTTAGCCCA CGATGCGCCG GGCTCCCACC ACTCTCGAAG
  CCGGGCCCGC TCCCGAGTCG CCGCGACCAC TGCGGGTTCA CGCTGCGCTT CCACCTGCGC
  TCTGAGCGTT CTCTACCTGC GCCCGCGGGC CGCGAGGATC TCTGGCTCTG CCGGGTCCCC
  S
  GGTCCCGAGC CCCAGAATGT CCCCTCCGCC CGCGTAAGGT CGCCCACCTG CGTCTGCGGA
  GCCTCACGCT CCGGCCCGGG CCCGGCTGCC AACGATGGCC CTGCGCCACC CGCTCGCGCC
  CTGCGTCCCC GCCGCGGCAG CTACCGGTCG CCGGGGTCCC GGGCCCAGAC CCGCGTTCCC
  TCGCCTCCCG GGCGGGCGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8662675	WI_WGS_3_108908752	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6256892					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108323131 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Celsr2	cadherin, EGF LAG seven-pass G-type receptor 2			Intron
				mRNA-UTR
Cpgi13701	CpG island 13701			within coordinates
Gm52630	predicted gene, 52630			249 bp upstream
Rr583231	regulatory region 583231			within coordinates
Rr583232	regulatory region 583232			242 bp proximal
Rr583233	regulatory region 583233			284 bp proximal
Rr583234	regulatory region 583234			313 bp proximal
Tssr31250	transcription start site region 31250			164 bp upstream
Tssr35143	transcription start site region 35143			196 bp downstream
Tssr35144	transcription start site region 35144			237 bp downstream