rs6255754 SNP Detail

Summary

• ID
  rs6255754
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95842726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGGTTAT GTAGAGAGAC
  CCTGTGTCAA ACAAAGGCCT CAAACCAGTT CATTTCAAAA GGCACTTAAC CACCAGGCTT
  GACGGCCTGA CTTGATTCTC GGAACCCACG TGGTACATGG AAAGAACCCA CAACTGAAAG
  TTACTCTCTG TCACACACAT GAATGCTTAT GGAATATGCG TGCATCTCCC TGCTCAATAT
  R
  ATTAAAATGT ATAATAAATA AAAAATAAAA GTCCCCGGGC CGTGGTGGCG CATGCCTTTA
  ATCCCAGCGC TCGGGAGACA GAGGCAGGCG GATTTCTGAG TTTGAGGCCA ACCTGGTCTA
  CAAAGTGAGT TCCAGGACAG CCAGGGCTAT ACAGAGAAAC CCTGTCTCGA AGAAAGAAGA
  AGAAGAAAAA AAAAAGGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8661535	WI_WGS_3_96220988	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6255754					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95842726 () rs orientation: forward

Symbol	Name	Function Class
Anp32e	acidic nuclear phosphoprotein 32 family member E	Intron
Rr581091	regulatory region 581091	609 bp proximal
Tssr30659	transcription start site region 30659	1392 bp downstream
Tssr30660	transcription start site region 30660	578 bp downstream
Tssr30661	transcription start site region 30661	1729 bp upstream