rs6254929 SNP Detail

Summary

• ID
  rs6254929
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30198242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGATGGAA ACTTCTGAGA
  GGCAAGAGAA ATGATGGGGG ATGAGAGTCC ACTCTGCTCG GTTGAGTTCT AACTTAGCTG
  TTCCACGTGG AAGCCCCTTG TCAGACATAT CTTAATTTAT AGCAGAAACA AAGGGAAGGG
  ACTGTGCTCC GCTGCACAGA GGGTTCAGGA ACGAACCCAC AGACAGGGTG TTTTGAGCAG
  Y
  TCCAGCAGTC TCTCCCAACT GAGCATGGAG CGAGTCCCTT TACCTCCTTG CTCCCTGTTC
  CGGAGGCTGG GGACAGACAG TCTTTTATTA TTTCTGCATT GCCTAATAGG GGCCCTCTCT
  TCAGGAGCAT GCGTGTCTTT TACAAATGAC GCTTCCTTTG AAGACAGGCA AGAGATCAGA
  TTAAGCCTTT CAAAATATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	MSM/Ms
ss8660710	WI_WGS_3_29957038	WI	MOUSE	f	SNP			T	C
ss134729379	ENSMUSSNP5229629	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	MSM/Ms
rs6254929					SNP	T	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30198242 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574726	regulatory region 574726			within coordinates