rs6253861 SNP Detail

Summary

• ID
  rs6253861
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:54630877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         AGCCACCCTC
  TTGCCTAGCA CTCCTGCAAG tcttcagtgg atgaaactca ccctctagta ggtttctcag
  ATGAGACATG TTGAAAACTT TTCCTGTATA CTTAGCACAC TAAGGGGTTT GCTTTGCCGA
  TAAGAGGTCT AGTTGTCTTT CTTACACTTT TTAAAAACAA ATGTTGCTTG TTTCCTTTCT
  GTCCATGTGT GGGGGATGGT GATGGTCAGA GGACTAGTGG GAAGAAGTTA TTACCTTCTT
  S
  CACTCTTGGG TTCTGGGGTC ANTCTTGGGG ACAAGTGCCT TCACTGGNTG GAGGNTTTTG
  TTGTTACTGT TGTTTTTGAG GCAAGCTCTT ACTCTGTATT GCAACATAAC TTGGAACTCA
  GCAGTCATTC TACTCCAGCA CCTAGGTGTG AACCTGCCAG CTGTTTGCCT Atttaagttt
  gcattttagt agtattgagt acattcacat cattgcacaa AGAATATTTT ATTGTGCAAA
  ATTGGAACTT                                                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8659641	WI_WGS_3_55190914	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6253861					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54630877 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr397673	regulatory region 397673			269 bp upstream
Rr397674	regulatory region 397674			785 bp upstream
Rr576833	regulatory region 576833			395 bp proximal
Supt20	SPT20 SAGA complex component			Intron
				Noncoding-Transcript-Variant