rs6253854 SNP Detail

Summary

• ID
  rs6253854
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:5291920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCATTTTG GGGCTAGCCA
  GCAAAACGTC CATTTGTCTC ATAGCTTTTA GGTTCAGTTG CTGGGACTCT GTTACAAAGG
  TTATATGGAA ACTTGAGAAA TGACAAGTGT TCTTCTATAA ATGCAAGTGT GCAGGTTGCC
  TCTTGAGTAC AGTGAATTGT AAAGGAAAAG TGTTTGATCT TTGTTATACA GTCACCCAAC
  R
  TCTTTACAGG AGTCTTTTTA AAAATTTGTC AAGAAATTCT GGGTTGTTTC AGAAACTTTG
  ATGACTAACT TTATGATATG CTTGGAAAAC AAAGTCTTAA AAGAACAAAA ACGAAATCCA
  CATGGAGGTT ATGTTTTACA CGAATAAGGG CTCATTAAAG TATTTCCATA AGAAAAACGT
  GTTAATTTAA AAAATAAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8659634	WI_WGS_3_5241766	WI	MOUSE	f	SNP							G		A
ss46789279	NES10634031	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		A		G	G	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6253854					SNP	G	G	G	G	G	G	G	A	A	G	G	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46789279	NES10634031	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:5291920 () rs orientation: forward

Symbol	Name	Function Class
Rr406719	regulatory region 406719	638 bp distal
Rr573176	regulatory region 573176	744 bp distal
Rr573177	regulatory region 573177	228 bp distal
Rr573178	regulatory region 573178	171 bp proximal
Zfhx4	zinc finger homeodomain 4	Intron