rs6253405 SNP Detail

Summary

• ID
  rs6253405
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:73070508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAAGTAAG CTTGGTCAAG
  TCACTTAACC CTCTGAGGCT CCCAACAGCT CCCAGCAATG TCTTCATCTG CTCCCCAGAG
  GAGAGGAACC CGCAAGACTG GGGAGGAGAC GAAAGGCCAG TAAGAGGAGA AATCCAGAGA
  GCATTTATGC CCACCGGACA CACAACCTCA GCACCAGATG TGAGGAGAGA GAGAATGTTC
  M
  AGAGCCTTGC TTGAAACAAA GAAACAAGCA AAACCACAGG CTCTTAAACA AAGACCCTGA
  AGGGTTGATC TAGGAGGAAA GAGCTAAATG CACCCACTCT CCTGCATTGT CAGTCACCAA
  AGGCCTGGCC CCCCCAGTGG TCAGTGGGAT TGTTAAAGAA AACAATCCCA GGGGAACAGC
  ATAGCAATGG CGGGGCCATT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8659184	WI_WGS_7_62875596	WI	MOUSE	f	SNP						A		C
ss61020314	NES16107456	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A		A		A	A	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6253405					SNP	A	A	A	A	A	A	A	C	A	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61020314	NES16107456	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:73070508 () rs orientation: forward

Symbol	Name	Function Class
Gm44645	predicted gene 44645	1490 bp upstream
Rgma	repulsive guidance molecule family member A	861 bp downstream
Rr648938	regulatory region 648938	944 bp distal
Rr648939	regulatory region 648939	1064 bp distal
Rr648940	regulatory region 648940	within coordinates
Rr648941	regulatory region 648941	1296 bp proximal
Rr648942	regulatory region 648942	1538 bp proximal
Rr648943	regulatory region 648943	1891 bp proximal
Tssr72937	transcription start site region 72937	1779 bp downstream