rs6253274 SNP Detail

Summary

• ID
  rs6253274
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:73070428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGTCAAG GGCAGAGCCA
  AGGCATACAC CTAGGTCAAT TTTGCTTGTG ATACTCTGTT CAAGTCAAGT TTAAGTCCCA
  GATAAGTAAG CTTGGTCAAG TCACTTAACC CTCTGAGGCT CCCAACAGCT CCCAGCAATG
  TCTTCATCTG CTCCCCAGAG GAGAGGAACC CGCAAGACTG GGGAGGAGAC GAAAGGCCAG
  Y
  AAGAGGAGAA ATCCAGAGAG CATTTATGCC CACCGGACAC ACAACCTCAG CACCAGATGT
  GAGGAGAGAG AGAATGTTCA AGAGCCTTGC TTGAAACAAA GAAACAAGCA AAACCACAGG
  CTCTTAAACA AAGACCCTGA AGGGTTGATC TAGGAGGAAA GAGCTAAATG CACCCACTCT
  CCTGCATTGT CAGTCACCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8659053	WI_WGS_7_62875516	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6253274					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:73070428 () rs orientation: forward

Symbol	Name	Function Class
Gm44645	predicted gene 44645	1570 bp upstream
Rgma	repulsive guidance molecule family member A	781 bp downstream
Rr648938	regulatory region 648938	864 bp distal
Rr648939	regulatory region 648939	984 bp distal
Rr648940	regulatory region 648940	within coordinates
Rr648941	regulatory region 648941	1376 bp proximal
Rr648942	regulatory region 648942	1618 bp proximal
Rr648943	regulatory region 648943	1971 bp proximal
Tssr72937	transcription start site region 72937	1859 bp downstream