rs6252804 SNP Detail

Summary

• ID
  rs6252804
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:39513195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCAG GTTCCTGCCT GCTACAGTGG
  R
  AAGCTAAGCA CAGCCTCTTC ACAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss8658583	WI_WGS_3_39339979	WI	MOUSE	f	SNP								G		A
ss60392733	NES15896499	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	G	G		A		G	G	G	A
ss134850466	ENSMUSSNP4612815	ENSEMBL	ENSEMBL_Sanger	f	SNP		G									G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs6252804					SNP	G	G	A	G	A	G	G	G	A	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60392733	NES15896499	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:39513195 () rs orientation: forward

Symbol	Name	Function Class
Gm30063	predicted gene, 30063	1734 bp upstream
Rr575757	regulatory region 575757	1263 bp proximal
Rr575758	regulatory region 575758	1832 bp proximal