rs6252534 SNP Detail

Summary

• ID
  rs6252534
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:95678533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         ACTTCACTGA
  TGATAGGCAG GAGGCAAACA AGCCAACAGC AGGATATTCA TCCTGACTGG CCATATGGAA
  ACACAACTGA AACCCGTTAC CTCATGCCAT GCTGTTGGGA AAGAAAGTAC AACCGGAAAC
  ATCAGATTAC CAGCTGTGAG CATGGCTCCT TAGGCCTCTC AGCCATCTCC ACAGCCCAGT
  ACAGTAGTTT CTTTAAAAAC CAGACATACA TTTACAATGT GACCAAGATA CTTATCCTGG
  R
  AATATACCCT AGAGACACAA ATATGTTCAA ATAAAAACTG AAACAGCTCT GTTTATAGAT
  GGTTATTTGT GATGGACATA AACTGAAAAC AAGCAAACTG TCTCTCAGCA GGTGCACAAT
  TAAACTAGAC TATCCNTACC ACCTGCAGCC TGGGTTACAC CCAGGAAACA TACGTACAAT
  AGACAACGTT CATATTATGT NATCTGTGGC ACTGTGGCTT GTGCTCCAGG AACATAAACT
  TGGACACGNC                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8658313	WI_WGS_6_96509844	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6252534					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:95678533 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr635030	regulatory region 635030			342 bp distal
Rr635031	regulatory region 635031			400 bp proximal
Rr635032	regulatory region 635032			757 bp proximal
Suclg2	succinate-Coenzyme A ligase, GDP-forming, beta subunit			Intron
				Noncoding-Transcript-Variant