rs6252319 SNP Detail

Summary

• ID
  rs6252319
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:69034426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCT CGATCTGAGG GCCCGGCTTT
  R
  CGGCCACGCC CATCGCCGCC AACCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8658097	WI_WGS_3_69729656	WI	MOUSE	f	SNP		A	G
ss45527848	mCV24615981	ABI	CRAMUS_MOUSE	f	SNP	G	A		G
ss135265155	ENSMUSSNP3916469	ENSEMBL	ENSEMBL_Sanger	f	SNP	G			G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6252319					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69034426 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13258	CpG island 13258	within coordinates
Kpna4	karyopherin subunit alpha 4	Coding-NonSynonymous
Rr397714	regulatory region 397714	within coordinates
Rr578129	regulatory region 578129	1118 bp distal
Rr578130	regulatory region 578130	1037 bp distal
Rr578131	regulatory region 578131	889 bp distal
Rr578132	regulatory region 578132	within coordinates
Tssr902	transcription start site region 902	59 bp upstream
Tssr33536	transcription start site region 33536	1723 bp upstream
Tssr33537	transcription start site region 33537	208 bp upstream
Tssr33538	transcription start site region 33538	33 bp upstream
Tssr33539	transcription start site region 33539	8 bp upstream
Tssr33540	transcription start site region 33540	5 bp downstream