rs6250667 SNP Detail

Summary

• ID
  rs6250667
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100996010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCATCAGA GTATAAATTG
  TCTGATGCTC TAAATAAAGT TAGCAATTGC AGGAGACTTT AGTCCGCCTC ATTTTTTAGG
  ATCCATTCTA CCAGGTCCCC AATTAGAGCA GGAAACAGAT TCTCATTTAA TTTTCTTCTT
  AAGTCCACAG GGAAGAAAAA TATTTAGTAC AACTGCAGTT AACTTCATCT ATCATTATTC
  Y
  AACCTGTAAG TCCTCCCCTC CTCCCAAAAT ATAAAATTCA TATTTTTTGT ACCCTGGCTT
  GAAGGAGCAT CAGTATTAAA TATGACATTC AACTATGAAA ACCATGTAGC AGACATTGCA
  AGTGATTATC TTCTTCCTTC TCTACTTTCC ATGCTGCCTT GTGAGTTTAG CCTTTTATCT
  TATTTTAAGG TTCTCTTTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8656437	WI_WGS_3_101200514	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6250667					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100996010 () rs orientation: forward

Symbol	Name	Function Class
Gm43465	predicted gene 43465	1301 bp upstream
Ptgfrn	prostaglandin F2 receptor negative regulator	Intron
Rr581954	regulatory region 581954	1415 bp distal