rs6250240 SNP Detail

Summary

• ID
  rs6250240
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:97468545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCTGAGGA GGAGGATGCA
  GGCTGTGAAT GGCGGGCCTT ACTTCTGGGA AAGTAGTATC TGCAGAGATG GTTAAGGGAA
  ACATATCTCA TCACTTTAAC TCAACTTTAC CCAAGCGCCT GGTGCTTGGA TGATCACTGC
  AAAACACTTC ATGCCTTCTC TTCAGATCAG AAACTCTTCT ACTAATGTCA GAACTCGTGA
  Y
  TGTCATGGTT ATGTGGTGTA AATTTCTGAC ACTGCACAAG CACATAAAAT GTGACTTTTA
  TATTAAGGCT TTATAGGGAC ATAAATCCTT TAGGGACCAC ATGGAATGCA CGTAAGGATC
  TAGGTAAAAA GATAGACGTT CTGTATATAG AACCTAGAGG TTAATCCTGT TGTTTCTAGC
  TAGTTTTTTG GACACAGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8656010	WI_WGS_3_97884198	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6250240					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97468545 () rs orientation: forward

Symbol	Name	Function Class
Chd1l	chromodomain helicase DNA binding protein 1-like	Intron
Gm40102	predicted gene, 40102	within coordinates