rs6250179 SNP Detail

Summary

• ID
  rs6250179
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:97468511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCAATGCT GGGCTGGTTG
  CTAGGGAACC AGTGGTGCTG AGGAGGAGGA TGCAGGCTGT GAATGGCGGG CCTTACTTCT
  GGGAAAGTAG TATCTGCAGA GATGGTTAAG GGAAACATAT CTCATCACTT TAACTCAACT
  TTACCCAAGC GCCTGGTGCT TGGATGATCA CTGCAAAACA CTTCATGCCT TCTCTTCAGA
  Y
  CAGAAACTCT TCTACTAATG TCAGAACTCG TGATTGTCAT GGTTATGTGG TGTAAATTTC
  TGACACTGCA CAAGCACATA AAATGTGACT TTTATATTAA GGCTTTATAG GGACATAAAT
  CCTTTAGGGA CCACATGGAA TGCACGTAAG GATCTAGGTA AAAAGATAGA CGTTCTGTAT
  ATAGAACCTA GAGGTTAATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C57BL/6J	CZECHII/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss8655949	WI_WGS_3_97884164	WI	MOUSE	f	SNP				T	C
ss50997896	NES13922348	PERLEGEN	MM_PANEL2	f	SNP	T	T	T			T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C57BL/6J	CZECHII/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs6250179					SNP	T	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50997896	NES13922348	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97468511 () rs orientation: forward

Symbol	Name	Function Class
Chd1l	chromodomain helicase DNA binding protein 1-like	Intron
Gm40102	predicted gene, 40102	within coordinates