rs6249689 SNP Detail

Summary

• ID
  rs6249689
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:97468422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCAGAGAA TATGACCAAA
  GATAGCCTTG TTTCCTGAAA ACTAACAGTC AATCTGGGAG CAAGAATCTA ACTGGTTGCT
  GAAAACTGGA CCCAATGCTG GGCTGGTTGC TAGGGAACCA GTGGTGCTGA GGAGGAGGAT
  GCAGGCTGTG AATGGCGGGC CTTACTTCTG GGAAAGTAGT ATCTGCAGAG ATGGTTAAGG
  R
  AAACATATCT CATCACTTTA ACTCAACTTT ACCCAAGCGC CTGGTGCTTG GATGATCACT
  GCAAAACACT TCATGCCTTC TCTTCAGATC AGAAACTCTT CTACTAATGT CAGAACTCGT
  GATTGTCATG GTTATGTGGT GTAAATTTCT GACACTGCAC AAGCACATAA AATGTGACTT
  TTATATTAAG GCTTTATAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8655459	WI_WGS_3_97884075	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6249689					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97468422 () rs orientation: forward

Symbol	Name	Function Class
Chd1l	chromodomain helicase DNA binding protein 1-like	Intron
Gm40102	predicted gene, 40102	within coordinates