rs6248631 SNP Detail

Summary

• ID
  rs6248631
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100995674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAGAGACA CCTCAAAGCC
  ATCCAGCCTC AGCGGCCATT GACTTGGATT CTTGGTGGAA CACAGCGCAA GGACGGAGTC
  ATGGGAGGAG AAATCTGAGT GCTTGTGAGA AAACTCCAAG AAAACATGCC TTGGGACCTC
  AGTTTCTTCA AAACACGGAG TTGTTCTTGG AATGTGTTCT TGTGCTCCTC CCAGCTATCA
  K
  AAGGAGTGGG TTTGCTTCAG ATTAATTACT TGTTATTGCT GCTGTGAATC ATAGGCTCTA
  CAGGAAAACA TGTTCTTGCC ACATGCAGCC TGTCCTGATA TGGTGATTGT ACATTTTACT
  CATGTGACTC TTTTTAACCA TCAGAGTATA AATTGTCTGA TGCTCTAAAT AAAGTTAGCA
  ATTGCAGGAG ACTTTAGTCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8654399	WI_WGS_3_101200178	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6248631					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100995674 () rs orientation: forward

Symbol	Name	Function Class
Gm43465	predicted gene 43465	965 bp upstream
Ptgfrn	prostaglandin F2 receptor negative regulator	Intron
Rr581954	regulatory region 581954	1079 bp distal