rs6248591 SNP Detail

Summary

• ID
  rs6248591
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100995652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCCGCTC AGCTTGGGTC
  CCCTTAGAGA CACCTCAAAG CCATCCAGCC TCAGCGGCCA TTGACTTGGA TTCTTGGTGG
  AACACAGCGC AAGGACGGAG TCATGGGAGG AGAAATCTGA GTGCTTGTGA GAAAACTCCA
  AGAAAACATG CCTTGGGACC TCAGTTTCTT CAAAACACGG AGTTGTTCTT GGAATGTGTT
  Y
  TTGTGCTCCT CCCAGCTATC AGAAGGAGTG GGTTTGCTTC AGATTAATTA CTTGTTATTG
  CTGCTGTGAA TCATAGGCTC TACAGGAAAA CATGTTCTTG CCACATGCAG CCTGTCCTGA
  TATGGTGATT GTACATTTTA CTCATGTGAC TCTTTTTAAC CATCAGAGTA TAAATTGTCT
  GATGCTCTAA ATAAAGTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8654359	WI_WGS_3_101200156	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6248591					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100995652 () rs orientation: forward

Symbol	Name	Function Class
Gm43465	predicted gene 43465	943 bp upstream
Ptgfrn	prostaglandin F2 receptor negative regulator	Intron
Rr581954	regulatory region 581954	1057 bp distal