rs6248578 SNP Detail

Summary

• ID
  rs6248578
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100995643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TTCTACACCA
  AATAAGCTAG TGCCCATCAC NGTTGCTAAG AGTCCTGCGC TNGCTGTGAC AGCCCGCTCA
  GCTTGGGTCC CCTTAGAGAC ACCTCAAAGC CATCCAGCCT CAGCGNCCAT TGACTTGGAT
  TCTTGGTGGA ACACAGCGCA AGGACGGAGT CATGGGAGGA GAAATCTGAG TGCTTGTGAG
  AAAACTCCAA GAAAACATGC Cttgggacct cagtttcttc aaaacangga gttgttcttg
  R
  aatgtgttnt tgtgctcctc ccagctatca naaggagtgg gtttgcttca gattaattac
  ttgttattgc tgctgtgaat cataggctct acaggaaaac atgttnttgc cacatgcagC
  CTGTCCTGAT ATGGTGATTG TACATTTTAC TCATGTGACT CTTNTTAACC ATCAGAGTAT
  AAATTGTCTG ATGCTCTAAA TAAAGTTAGC AATTGCAGGA GACTTTAGTC CGCCTCATTT
  TTTAGGATCC                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8654346	WI_WGS_3_101200147	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6248578					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100995643 () rs orientation: forward

Symbol	Name	Function Class
Gm43465	predicted gene 43465	934 bp upstream
Ptgfrn	prostaglandin F2 receptor negative regulator	Intron
Rr581954	regulatory region 581954	1048 bp distal