rs6248559 SNP Detail

Summary

• ID
  rs6248559
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100995629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGAGTCCT GCGCTCGCTG
  TGACAGCCCG CTCAGCTTGG GTCCCCTTAG AGACACCTCA AAGCCATCCA GCCTCAGCGG
  CCATTGACTT GGATTCTTGG TGGAACACAG CGCAAGGACG GAGTCATGGG AGGAGAAATC
  TGAGTGCTTG TGAGAAAACT CCAAGAAAAC ATGCCTTGGG ACCTCAGTTT CTTCAAAACA
  S
  GGAGTTGTTC TTGGAATGTG TTCTTGTGCT CCTCCCAGCT ATCAGAAGGA GTGGGTTTGC
  TTCAGATTAA TTACTTGTTA TTGCTGCTGT GAATCATAGG CTCTACAGGA AAACATGTTC
  TTGCCACATG CAGCCTGTCC TGATATGGTG ATTGTACATT TTACTCATGT GACTCTTTTT
  AACCATCAGA GTATAAATTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8654326	WI_WGS_3_101200133	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6248559					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100995629 () rs orientation: forward

Symbol	Name	Function Class
Gm43465	predicted gene 43465	920 bp upstream
Ptgfrn	prostaglandin F2 receptor negative regulator	Intron
Rr581954	regulatory region 581954	1034 bp distal