rs6247881 SNP Detail

Summary

• ID
  rs6247881
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95946629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGGGTACA CGGCATTGTT
  AGCAGACTCG GGTTTTACTG TACACCTTGT TCAACCTATA TTTACAATCT GCCTGCAAAT
  TAAGAAATGC CAGTCTCAAG AACAGAATTC TTTGTAAAGA TTTGGGAGCC ATGGACAATA
  TTAAAATGAT GATGAATCAC TTCATATAAA TATAAAGCAA ACAGCATTGT TATGATTTTT
  W
  AAATGTTGGT GTTTTCAGAA AATCCTAATA AATGTTTAAA ACTTAAAAGC AAGACTTGTA
  GATGCCAATA AAAACTGTGG TGGACCGGAG CACCCACATG CACTGCTCCC ATTTGATTCT
  AATGTATATA AAATGTCTTT CGGTAAGGAA CCAATGTCAC CAAGCATCCT ATGTGTCGCA
  TCAAATCCTC ATTGCAACAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8653643	WI_WGS_3_96325095	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6247881					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95946629 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr581123	regulatory region 581123			1351 bp proximal
Vps45	vacuolar protein sorting 45			Intron
				mRNA-UTR