rs6247697 SNP Detail

Summary

• ID
  rs6247697
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:42028290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CAGTACATTA
  CAGAGCACAG TAGGGTTATA ATGAGCATGC NGAAAGTGCA ATATCTAACC AACCCTTAGA
  CTTACTGGAA CAGTTTGATT CAACTTTCTC AGACAAAATG CTGAACAGTC AGATCATTTT
  GCCCAAAGGA TTGGACTGCA ATTGTTTTGT AAGTTTCTTG GGAGAAATGC AATTAGTGAC
  AAGATTTAAT AAAGCCAGAA CAACTGAATG TGATCAGACA AGCCTGTATT CTTTTCTGTT
  Y
  TTTCTGTATA ATGTGAGAAA ATAGCAAGGA AACAATTACA TTACTAAATG AATTAAACAA
  AGCTCCAAAA ACATAAATTA GAATTTAACT ACACCATTAA AAGCTAATTT AATTTGCAAG
  CCATCATTAC CAGATAATAA AGACCCATTG CAAAATGTAC AATACCTCGT GATCATGGGG
  AAAAAAAAAC AAGCAATAAA TCTCATTGAG CAGATGAGTG TCTGTTATAT TAGCGGATGA
  AAATGCTGAA                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8653459	WI_WGS_3_42139819	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6247697					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:42028290 () rs orientation: forward

Symbol	Name	Function Class
Rr576014	regulatory region 576014	702 bp proximal
Rr576015	regulatory region 576015	787 bp proximal