rs6246859 SNP Detail

Summary

• ID
  rs6246859
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68843954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGGCATCC AGCACGGTGC
  ACACACCTTT AGTCCGAACA CTCAAGAGGC AGAGTCAGAG TCAGGTAAAT CTCTGAGTTT
  GAGGCCAGCC TGGTCTGCAT AGTGAGACCC TGCCTAAAAC AAACAAACAA AAACAAATAT
  AACATAATTA TGTTCAACAT AATTATTTTT CCTATAGATC TTCCAGCACT TTTGTTGGAT
  W
  AAAACATTAT TTCTGTAAAG TGCCCTAAAA ATGTAAGCTC TGACCACACT TACTCAATAA
  AGTGACAAGT AGATGCACAA ATAATTCCTC TCGTTTTTAA TAGGACAACG AGATTTAAAG
  AACTGGGAGA AAGGCAGACA TAGTGGCTAG TAATCCTAGC ACTCAGCAGT GAGAGGCAGG
  GGGATGACTA TGAGCTCAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8652620	WI_WGS_3_69539906	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6246859					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68843954 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ift80	intraflagellar transport 80			Intron
				Noncoding-Transcript-Variant
Rr578096	regulatory region 578096			932 bp distal
Rr578097	regulatory region 578097			887 bp distal