rs6246603 SNP Detail

Summary

• ID
  rs6246603
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:42028080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAAGGAGC CTGTGGAGTG
  AGAATGGAGA AAATGCAAGC AGACCTTAGA AAATATGCTC TGTGCTGCTA ACGATCAACT
  TTAGCTTTCA GTGTTCATGA ATGTTCAAGG AAAGAAAGAA AGCTCCCAGG AAAGGAATTT
  ATAGTAAAAG AATAATTGCC CAGTACATTA CAGAGCACAG TAGGGTTATA ATGAGCATGC
  R
  GAAAGTGCAA TATCTAACCA ACCCTTAGAC TTACTGGAAC AGTTTGATTC AACTTTCTCA
  GACAAAATGC TGAACAGTCA GATCATTTTG CCCAAAGGAT TGGACTGCAA TTGTTTTGTA
  AGTTTCTTGG GAGAAATGCA ATTAGTGACA AGATTTAATA AAGCCAGAAC AACTGAATGT
  GATCAGACAA GCCTGTATTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8652364	WI_WGS_3_42139609	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6246603					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:42028080 () rs orientation: forward

Symbol	Name	Function Class
Rr576014	regulatory region 576014	912 bp proximal
Rr576015	regulatory region 576015	997 bp proximal