rs6243727 SNP Detail

Summary

• ID
  rs6243727
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:9268329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACATCATGA TGAACTATAT
  AATAGGAATA TTGGAAAGAG ACTCATCAAC GTTCAGTTTT TAAATAGATG TGGCAAGTTT
  AGGCAAATGT ATGGAGGACG ACTGAGTCAC CGTAGCAGAT TTACTTATGT CTTCATACTA
  CCCAATGCTC CTGCCAACCT GAGGAGCAGA GGTTGCGGTT GGATGCTGCA TTTGTGTCTT
  K
  TCTCCATCAT TTCTGTTTTG CAAACATTTC TCTTTGTCTT TCCTCTTCAG AAATGAGGCT
  TTCATCAGGA AGATCTTGCA GCCTATATAA AATTAAGTTT ATTGTTTTTG ATAATTTCTA
  TTATCTTAAA TGAAATTTAT ATGCATAAAT ACCTACACAA ATTGCTGAGT AGAATTAGAA
  GACTGTATAT CATATATATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss8649482	WI_WGS_4_8746701	WI	MOUSE	f	SNP						T		G
ss37857374	NES08661250	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T		G		T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs6243727					SNP	T	T	T	T	T	T	G	G	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37857374	NES08661250	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9268329 () rs orientation: forward

Symbol	Name	Function Class
Clvs1	clavesin 1	Intron
Cpgi14015	CpG island 14015	980 bp proximal
Rr588683	regulatory region 588683	726 bp proximal
Rr588684	regulatory region 588684	999 bp proximal
Tssr36453	transcription start site region 36453	956 bp upstream
Tssr36454	transcription start site region 36454	1009 bp upstream