rs6243275 SNP Detail

Summary

• ID
  rs6243275
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72925382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGCGTTT TTCTTGAGAA
  CATGAAAACT TTATTCTCAA GACATTTAAG ATTACTACTT CCCTTTGACA ATATTGAAAG
  AAAGTTCAAA GTCAAGTGAA ATTATATTTA TCAGTAATAA AAACACTAAC GAAGATCATA
  CATCTGAAGT GTGAATCAAC AAACCAGACT GAAGAATCCT CCTAAGCATA TTTTTGATAC
  W
  AAGGATTTTG CTTAATAGCA ACATGCTATT AATAGGAAGT TTATCTTTAA AAAGACAATG
  TACTCCCTCA TTCTAAAAGA CATACTAAAT AAAGAGTCAC ATGATATTTG TAAAGATGTA
  ATGTACTGAA AGCCATATGG TACTTACCTC TAGGATCTAA GCCTACTATT ATAAAACTAT
  ACATACAAGT TAAATGAAAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8649029	WI_WGS_2_73921340	WI	MOUSE	f	SNP						T		A
ss38117849	NES09277696	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T		A		T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6243275					SNP	T	T	T	T	T	T	A	A	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38117849	NES09277696	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72925382 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ola1	Obg-like ATPase 1			Intron
				Noncoding-Transcript-Variant
Rr559096	regulatory region 559096			1595 bp distal
Rr559097	regulatory region 559097			337 bp proximal
Rr559098	regulatory region 559098			1623 bp proximal