rs6243179 SNP Detail

Summary

• ID
  rs6243179
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150353852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGCGCGTT CGAGTGTGGT
  TGCGCATGTG CTCTAGCATG TGGGTGGAAG TCTAAGGACA AGCGCAGGTG ATTATTCTCA
  GCTTCCACAT TGAGAGAGGT TCTCATTAAT GCTGCATAAG CCGAGCTAGC TGGCCTGAGA
  GCTCCACGGT ATATTTTTGT CTCTGCCTCG CATCTCGGTG TAAGAGCTTT GCCATTACAG
  W
  TGTGTGCTGC CACACCTTGC TTTGCATGGG TGCTGGGGAT CTGAACTCCA ATCCCCATGC
  TTGTGGTTTT GTGTGTAGGA AGCGCTTTTA CCACTGAGCC ATACCGCAAC CACAAACCTC
  TATTCTTAAT CTATGGCCCT ATATCAAATA TTCGTACAGC ATCAGAGAAA GGAGCCATTC
  CTCCCCCACC CTGGCCTCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8648933	WI_WGS_4_145663168	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6243179					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150353852 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15349	CpG island 15349	94 bp distal
Rr377418	regulatory region 377418	94 bp downstream
Rr605260	regulatory region 605260	465 bp distal
Rr605261	regulatory region 605261	within coordinates