rs6242895 SNP Detail

Summary

• ID
  rs6242895
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:104558071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATC AACATCATCA GGCTGCATTC
  Y
  GGGGCCACAA GGAGGAGCAT AAGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8648649	WI_WGS_2_105631853	WI	MOUSE	f	SNP								T		C
ss37619381	NES09072981	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C		C	C	C		C	C	C	C		T
ss45233825	mCV24363740	ABI	CRAMUS_MOUSE	f	SNP		C	C					T			C
ss147153635	ENSMUSSNP397645	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C								C
ss320445567	CHEV_2_104567883	CHEVERUD	SCREENING_POP	f	SNP														C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6242895					SNP	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37619381	NES09072981	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:104558071 () rs orientation: forward

Symbol	Name	Function Class
Depdc7	DEP domain containing 7	Intron
Rr562115	regulatory region 562115	76 bp proximal