rs6242351 SNP Detail

Summary

• ID
  rs6242351
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121087854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         AGAATATGCA
  AAGTATAGCT TTCTTCCCCC CCAGAGATGT TACAGCCTGA AGACTGCTCC CATACAGAGA
  CTGTTCCTAC AGAGCTAAGC TTGCCCCCTT GTCCAGCTGA ACATAATAAC CCTGTTTCCT
  TGCATATATG TATGTGATCA CCCTGCCTTC CTGTATATAA TAAAGGCTCT AGCTTCTGGG
  ATCCTGTGGC TTCTTCATCA GAGAGCCCAG ACCATCCAGG CCTACCTATT CTGTATGTGT
  R
  TCTGCATGTC CTTCATTCCC TCATCACCCA GTTAGGTCAG ATTCAGGAGC TGTACAGAGC
  ATGGCAggat cctacaccct cttctgactt ccatggtcac caggtacaca gatggcacac
  agatatacat gcaaacaaaa cctccataca cattaaaatg tatacagtgt tctgcctgta
  tgtatgcctg taggccagaa gagggcacca gatctcatta tagatagtca tgagccacca
  tgtggttgct                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8648103	WI_WGS_3_121659758	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6242351					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121087854 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alg14	asparagine-linked glycosylation 14			Intron
				Noncoding-Transcript-Variant
Rr584041	regulatory region 584041			71 bp proximal
Rr584042	regulatory region 584042			191 bp proximal