rs6242224 SNP Detail

Summary

• ID
  rs6242224
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72925188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAACAAAGA AATGATTCCA
  CCTGCCAGTG TGCAGATCTA GATATGCTCT TGAAAATTCC ACACAAACAA AGCAGGTTCA
  CCCATGGCAT AGCACACACT TTGGGCTCCT GAGCACTCAC ACTTACCACG CACACGATTA
  TCTGCCTCCT GTGACGCCGG CACCAACCAT TCAACAATGG GTACCCAAAT TCTCAGAAGC
  R
  TTTTTCTTGA GAACATGAAA ACTTTATTCT CAAGACATTT AAGATTACTA CTTCCCTTTG
  ACAATATTGA AAGAAAGTTC AAAGTCAAGT GAAATTATAT TTATCAGTAA TAAAAACACT
  AACGAAGATC ATACATCTGA AGTGTGAATC AACAAACCAG ACTGAAGAAT CCTCCTAAGC
  ATATTTTTGA TACTAAGGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss8647976	WI_WGS_2_73921146	WI	MOUSE	f	SNP							G		A
ss38117851	NES09277692	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		A		G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs6242224					SNP	G	G	G	G	G	G	G	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38117851	NES09277692	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72925188 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ola1	Obg-like ATPase 1			Intron
				Noncoding-Transcript-Variant
Rr559096	regulatory region 559096			1401 bp distal
Rr559097	regulatory region 559097			531 bp proximal
Rr559098	regulatory region 559098			1817 bp proximal