rs6242154 SNP Detail

Summary

• ID
  rs6242154
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72925143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAGGTTGG AACTGCAGAC
  AGACATTTTT CCACTTGTCA ATCAGTCAAC AAAGAAATGA TTCCACCTGC CAGTGTGCAG
  ATCTAGATAT GCTCTTGAAA ATTCCACACA AACAAAGCAG GTTCACCCAT GGCATAGCAC
  ACACTTTGGG CTCCTGAGCA CTCACACTTA CCACGCACAC GATTATCTGC CTCCTGTGAC
  S
  CCGGCACCAA CCATTCAACA ATGGGTACCC AAATTCTCAG AAGCGTTTTT CTTGAGAACA
  TGAAAACTTT ATTCTCAAGA CATTTAAGAT TACTACTTCC CTTTGACAAT ATTGAAAGAA
  AGTTCAAAGT CAAGTGAAAT TATATTTATC AGTAATAAAA ACACTAACGA AGATCATACA
  TCTGAAGTGT GAATCAACAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8647906	WI_WGS_2_73921101	WI	MOUSE	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6242154					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72925143 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ola1	Obg-like ATPase 1			Intron
				Noncoding-Transcript-Variant
Rr559096	regulatory region 559096			1356 bp distal
Rr559097	regulatory region 559097			576 bp proximal
Rr559098	regulatory region 559098			1862 bp proximal