rs6242006 SNP Detail

Summary

• ID
  rs6242006
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30341487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAAGGAAA TGGAGGTGAG
  TCCCCAGGGG AGGTGATGGA ACCATGGTGT TGCTGTAGGC ACTAGGAGTT TGGGGTTAGG
  TTTTAGTTTA CGGTGTTAAG AATTCTGGAA TGAGATAAGT GGGTATCCTG GTTGGAAGTC
  AATAACTAAC TGTATTTGGC CCAAAGGTGG GATCGGGTGA GGGAAGGAGA GAAGTAGTCT
  R
  GTCAGGTGAG TGAAGAAGTT CTTGGCTAGC GTAGCTTGAC TGCTTTTGGT GTGAGGAGAA
  GGGAGTGCCC CGGGGTACTG TATACCTTCT TTTTTATTGG ATATTTTCTT TATTTACATT
  TCCCAGTTCC TCTCCCTCCT GGACTGTATA CCTTCTAAAA GTGTGGGGAG GAGGTGCTGG
  GTCTCTGCTC CAACACTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss8647757	WI_WGS_2_30794351	WI	MOUSE	f	SNP							A		G
ss37404774	NES08762470	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		A		A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs6242006					SNP	A	A	A	A	A	A	A	A	G	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37404774	NES08762470	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30341487 () rs orientation: forward

Symbol	Name	Function Class
Rr554329	regulatory region 554329	732 bp distal