rs6241716 SNP Detail

Summary

• ID
  rs6241716
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135870439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGAGGGAG CATCCAAGCT
  CTGTGAAGGA ACACTCTGGC CAATGTGAGG GAGCACTCTC ATTCCCGTGA GAAGTACTAA
  GGCCAATGCA TAGGAATGCC CCAGTTCATG TAAAAGAAGG CACCTGACAA CATGACATAA
  CAAATGTGCT TATGTGAGGA GGCCTCCAGC CTATGTGAGG GAAGGCCATG GTCCCTTTGA
  S
  AGAGCACCCT CATCTATGTG CAGGAACACC TGGCCTTGGG GGAAGCACCT GGCTCATGGC
  TAAGACCCCA TGCTCTTCTC ATGTCAATTT GTCAGCAGTG GAATTCTCAC TCTCAATGAT
  GTGTTCATTC AGGGAAAGTA GTGATCTTTC TGATAAACTG ATAAATGACC TGAGTGTCAC
  AAGGATGAGG TAGAATCCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8647467	WI_WGS_3_136650115	WI	MOUSE	f	SNP							G		C
ss51642431	NES14646549	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		C		G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6241716					SNP	G	G	G	G	G	G	G	C	C	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51642431	NES14646549	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135870439 () rs orientation: forward

Symbol	Name	Function Class
Bank1	B cell scaffold protein with ankyrin repeats 1	Intron
Rr585808	regulatory region 585808	656 bp proximal